TagDock Application – Academic License

TagDock is an efficient rigid body molecular docking algorithm that generates three-dimensional models of oligomeric biomolecular complexes in instances where there is limited experimental restraint data to guide the docking calculations. Through “distance difference analysis” TagDock additionally recommends followup experiments to further discriminate divergent (score-degenerate) clusters of TagDock’s initial solution models.

TagDock is provided free of charge to academic and not-for-profit institutions via our academic online licensing process for non-commercial research purposes.

LICENSING PROCESS OVERVIEW

1. After choosing license options and agreeing to terms below, you will be asked to provide contact information through the checkout system. No payment will be required.
   
   (Upon successful completion of this process, including necessary review and approval of your academic license application, you will receive an instructional email containing the remaining steps. Application approval may take 3-5 business days.)


2. Once approved, you will be notified that you may download the software by finding the "TagDock" section of your My premium content section (always accessible from the left-hand navigation menu).

Licensees conforming to the additional qualifications and terms stated below will be granted free access to the TagDock Academic License.

QUALIFICATION AND TERMS

PLEASE CAREFULLY REVIEW THIS SECTION BEFORE PROCEEDING

• TagDock "Non-Exclusive Academic Software License Agreement" is available free of charge ONLY to those individuals who have a full-time academic appointment at a non-profit academic and/or research institution.


• APPROVAL OF YOUR ORDER CAN NOT BE GUARANTEED UNLESS YOU HAVE PROVIDED AN EMAIL ADDRESS ASSOCIATED WITH A VALID, ACTIVE ACCOUNT WITH AN ACADEMIC OR OTHER RESEARCH INSTITUTION, e.g. [user@institution.edu].


• Requires the NAB module in AmberTools (free software from ambermd.org), which in turn minimally requires the GNU development environment on Linux, or Amber-supported compilers for other platforms.  


• TagDock is provided as a tar.gz file.

Please carefully read the following TagDock License Agreement. By selecting the "I accept the terms in the license agreement" option below this Agreement, you indicate your irrevocable acceptance of its terms and conditions and agree to be bound as set forth therein. Further, your acceptance signifies your understanding and acknowledgment that this Agreement constitutes and contains the total agreement between you and Vanderbilt University with respect to this transaction. In accepting this Agreement, you further acknowledge that any agreements entered into prior or contemporaneously with this Agreement are excluded, whether oral or in writing. By selecting the "I accept the terms in the license agreement" option, you specifically acknowledge, represent, and agree that any other terms and conditions contained in an invoice, acknowledge, purchase order or other document sent by or on behalf of you or the organization you represent in this transaction shall be void and of no effect. Finally, your selection of the "I accept the terms in the license agreement" option is a representation and warranty that you have the requisite authority and legal capacity to bind your organization to this Agreement.

TagDock software NON-EXCLUSIVE ACADEMIC LICENSE AGREEMENT PLEASE CAREFULLY READ THE FOLLOWING AGREEMENT. BY SELECTING THE "I ACCEPT THE TERMS IN THE LICENSE AGREEMENT" OPTION AT THE END OF THIS AGREEMENT, YOU INDICATE YOUR ACCEPTANCE OF ITS TERMS AND CONDITIONS AND AGREE TO BE BOUND AS SET FORTH HEREIN. YOU REPRESENT AND WARRANT THAT YOU HAVE THE REQUISITE AUTHORITY AND LEGAL CAPACITY TO BIND YOUR ORGANIZATION TO THIS AGREEMENT. This License Agreement ("Agreement") is entered into between Vanderbilt University, a private, non-profit institution of higher education in Nashville, Tennessee with offices at 1207 17th Avenue South, Suite 105, Nashville, Tennessee 37212 ("Vanderbilt") and the person representing the non-profit research and/or academic institution that registers to use the Software ("Licensee"). Prior to such registration in accordance with this Agreement, the Licensee shall have no rights or license in connection with the Software or this Agreement. Background TagDock is an efficient rigid body molecular docking algorithm that generates three-dimensional models of oligomeric biomolecular complexes in instances where there is limited experimental restraint data to guide the docking calculations. Through “distance difference analysis” TagDock additionally recommends followup experiments to further discriminate divergent (score-degenerate) clusters of TagDock’s initial solution models. Vanderbilt seeks to advance this research and to publish and enable adoption of research codes in furtherance of its public interest mission. Distribution of research codes as a research courtesy is facilitated by licensing these codes for development and use. The Software is provided free of cost to the licensee so that the Licensee may provide feedback and suggestions related to the Software. Vanderbilt may use the feedback and suggestions in any way, including in future modifications of the Software, which Vanderbilt may make available to Licensees at Vanderbilt’s sole discretion. Development of these codes was supported, in part, by the following, in part, by the following sponsors: the National Institutes of Health, Grant Number P01 GM080513. Definitions "Agreement" means this Non-Exclusive Academic Software License Agreement. "Effective Date" means the latest date upon which this Agreement is either entered into or renewed. "Licensing Contact" means the individual identified on the Registration Page and who shall be responsible for administering this Agreement on behalf of the Licensee. "Modifications" mean any changes or extensions introduced into the Software or otherwise based on or derived from the Software source statements by Vanderbilt. Modifications include, but are not limited to, corrections of program errors, translations and stylistic restructuring of the Software, addition or deletion of functions or enhancement of existing functions of the Software, changes or additions required to integrate the Software into other applications or to allow the Software to run under alternative operating systems or computer hardware configurations, and other adaptations of the Software. Licensee shall not make any Modifications. "Registration Page" means the portion of the web site used by Licensees to enter information permitting the licensing of the Software. "Software" means the current versions of the Codes as available on the Effective Date for which the Licensee desires to obtain licenses as well as any Modifications made to the Software. The Software selected for licensing is listed on Attachment A. "Technical Contact" means the individual authorized by Licensee to receive the Software and conduct all technical correspondence with Vanderbilt as listed on the Registration Page. 1. Grant Commencing on the Effective Date, and provided that Licensee abides by the terms of this Agreement, Vanderbilt hereby grants, and Licensee accepts, a limited, non-exclusive, non-transferable license to use the Software, and to make such copies of the Software in original or modified form as are necessary for such use. Licensee shall under no circumstances analyze for composition, structure, reverse engineer or decompile the Software or attempt to do so. These Grants are limited to Licensee’s use and does not authorize use of the Software by third parties or by anyone via the Internet or any other means. Licensee shall obtain no ownership in the Software under this Agreement, and with the exception of applying Vanderbilt-provided Modifications (or "updates"), shall not modify the Software or the accompanying documentation in any way, for any reason. Licensee shall not distribute, publish, or otherwise transfer or allow to be transferred, the Software or copies thereof, in whole or in part, without prior written permission of Vanderbilt. Licensee acknowledges and agrees that Vanderbilt Software (including Modifications) contains valuable proprietary information and trade secrets developed, licensed or acquired by Vanderbilt. 2. Use of Names Licensee shall not use the name "Vanderbilt University" or any abbreviation thereof, or the names of any Vanderbilt personnel or identifiers of the Software without prior written approval from Vanderbilt. 3. Delivery Vanderbilt shall provide Licensee access to the Software by means of an internet transmission (email and/or ftp) following execution of this Agreement. Licensee authorizes delivery of the Software to be made to the Technical Contact. 4. Updates Vanderbilt will provide updates to the Software, in Vanderbilt’s sole discretion, on an "as available" basis during the term of this Agreement. 5. Term This Agreement shall remain effective for a term of twelve (12) months from the Effective Date or any anniversary date upon which this Agreement has been renewed ("Termination Date") unless sooner terminated as provided herein. Licensee may renew the Agreement by mutual written consent on or before any Termination Date. If Licensee does not renew this Agreement before the Termination Date, the Agreement shall terminate in its entirety. 6. Termination This Agreement will terminate without further action by or notice from Vanderbilt for any future period for which Licensee has not abided by the terms of this Agreement including, but not limited to, the provisions of Section 7. Licensee may terminate this Agreement at any time upon written notice to Vanderbilt. Vanderbilt may terminate this Agreement immediately upon notice if Licensee is in breach of this Agreement. The provisions under which this Agreement may be terminated will be in addition to any and all other legal remedies which either party may have for the enforcement of any and all terms hereof, and do not in any way limit any other legal remedy such party may have. Termination of this Agreement will terminate all rights and licenses granted to Licensee herein. Licensee shall certify in writing to Vanderbilt within ten (10) days after Termination Date that the Software has been destroyed. 7. Licensee Status and Obligations (a) This "Non-Exclusive Academic Software License Agreement" shall be available only to non-profit academic and/or research institutions who use the Software solely for research purposes and provided that such Licensee abides by the terms of this Agreement including, but not limited to, the provisions of this Section 7. All other persons or entities seeking to license the Software may only license it pursuant to the "Non-Exclusive Commercial Software License Agreement." (b) Licensee shall: (i) Make all data generated by the Software including, but not limited to, protein sequences, models, predictions and structures immediately available upon request at no cost to other academic researchers for non-profit research purposes. If Licensee wishes to use or make available the Software for any commercial purposes, including fee-based service projects, Licensee shall need to enter into a separate fee-bearing license agreement with Vanderbilt University. In the event Licensee wishes to obtain such a commercial use license, Licensee must contact Vanderbilt’s Center for Technology Transfer and Commercialization, 1207 17th Avenue South, Suite 105, Nashville, Tennessee 37212. (ii) Not modify the Software or written materials or documentation related to the Software in any way. In particular, all Vanderbilt copyright, trademark, or other notices contained in the Software or written materials or documentation must be maintained by Licensee. (iii) Provide the developers of the Software at Vanderbilt with comprehensive feedback on the use of the Software in Licensee’s research which information Vanderbilt shall be permitted to use in evaluating and making changes to the Software. All bug reports and technical questions shall be sent to the developers of the Software. (c) Vanderbilt and Licensee will each acknowledge in their respective publications relating to their research utilizing the Software the contributions made by the other party. 8. Amendment of this Agreement Vanderbilt may amend this Agreement, in its sole and absolute discretion, at any time or from time-to-time during the Term or after a Termination Date. Such amendments may include, but not be limited to, the assessment of a license fee for use of the Software. 9. Limited Support; Updates Licensee shall receive reasonable assistance by email and access to updates and new releases of the Software, which Vanderbilt may make available from time to time within its sole discretion ("Limited Support"). Limited Support is provided by queries sent via the contact form at http://vueinnovations.com/contact or other contact point as may be designated by Vanderbilt from time to time. In order for Licensee to receive the Limited Support set forth herein, Licensee must be using the latest version and all current releases and updates of the Software. If Vanderbilt generally makes available new versions of the Software, the new versions will be available to Licensee at the discretion of Vanderbilt. Limited Support does not include responding to Licensee if, in Vanderbilt’s reasonable opinion, Licensee fails to provide sufficient information, as reasonably requested by Vanderbilt, to enable Vanderbilt to identify, reproduce and analyze the reported problem; Vanderbilt reserves the right to charge additional fees for such support. 10. Disclaimers The Software has been developed as part of research conducted at Vanderbilt University. The Software is experimental in nature and is available "AS IS," without obligation by Vanderbilt to provide Licensee services or support except as specified in this Agreement. The entire risk as to the quality and performance of the Software is with Licensee. TO THE FULLEST EXTENT PERMITTED BY APPLICABLE LAW, VANDERBILT DOES NOT MAKE AND EXPRESSLY DISCLAIMS ALL WARRANTIES WITH RESPECT TO THE SOFTWARE AND SUPPORT, INCLUDING, WITHOUT LIMITATION, THE IMPLIED WARRANTIES OF TITLE, NON-INFRINGEMENT, MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE, REGARDLESS OF WHETHER VANDERBILT KNOWS OR HAD REASON TO KNOW OF LICENSEE’S PARTICULAR NEEDS. NO EMPLOYEE, AGENT, DEALER OR DISTRIBUTOR OF VANDERBILT IS AUTHORIZED TO MODIFY THE LIMITED WARRANTY, OR TO MAKE ANY ADDITIONAL WARRANTIES. SOME COUNTRIES AND STATES DO NOT ALLOW THE EXCLUSION OF IMPLIED WARRANTIES, SO THE ABOVE EXCLUSION MAY NOT APPLY. THIS WARRANTY GIVES LICENSEE SPECIFIC LEGAL RIGHTS, AND LICENSEE MAY ALSO HAVE OTHER RIGHTS WHICH VARY FROM COUNTRY TO COUNTRY OR STATE TO STATE Vanderbilt’s entire liability and Licensee’s exclusive remedy for a breach of this Agreement shall be termination of this Agreement by returning or destroying the Software. Vanderbilt shall have no liability for consequential, exemplary, indirect, special, punitive or incidental damages whether based on contract, tort or any other legal theory, arising out of or related to this Agreement or the inability to use the Software or Limited Support, nor shall Vanderbilt be liable for any loss of data or lost profits of Licensee, even if Vanderbilt is apprised of the likelihood of such damages occurring. SOME COUNTRIES OR STATES DO NOT ALLOW THE LIMITATION OR EXCLUSION OF LIABILITY FOR INCIDENTAL OR CONSEQUENTIAL DAMAGES, SO THE ABOVE LIMITATION MAY NOT APPLY IN THOSE JURISDICTIONS. 11. Indemnification Licensee shall indemnify, defend and hold harmless Vanderbilt and its officers, trustees, faculty, staff, employees, students, agents and their respective successors or assigns against any and all claims, suits, losses, damages, costs, fees and expenses resulting from Licensee’s possession and/or use of the Software (including any Modifications), including by not limited to any damages, losses or liabilities whatsoever with respect to death or injury to any person and damage to any property. This indemnification clause shall survive the termination of this Agreement. 12. Compliance with Laws. Vanderbilt and Licensee will comply with all federal, state and local laws and regulations, as amended from time to time, applicable to such party’s performance of its obligations under this Agreement, including all applicable export controls and economic sanctions laws and regulations of the United States and other applicable jurisdictions. Further, because the provision of a “service” under U.S. economic sanctions is generally prohibited without a license, Vanderbilt will block the IP addresses of persons located in Iran, Syria, Republic of Sudan, Cuba, North Korea or any other country to which the provision of such services is prohibited and will take reasonable steps to exclude participation of persons identified on the U.S. Treasury Department’s List of Specially Designated Nationals, Blocked Persons and Foreign Sanction Evaders, except as licensed otherwise authorized by the U.S. Government. 13. Notices. All notices required or permitted relating to a claim or breach of this Agreement shall be in writing and sent to: (i) if to the Licensee: to the Licensing Contact; and (ii) if to Vanderbilt: Center for Technology Transfer and Commercialization, 1207 17th Avenue South, Suite 105, Nashville, Tennessee 37027. Either party may change their address from time to time by written notice to the other and shall be deemed validly given upon receipt of such notice given by certified mail, postage prepaid, or personal or courier delivery. All Limited Support or other notices relating to the usage of the Software will be provided by Vanderbilt either via telephone or email. 14. General This Agreement will be construed in accordance with, and its performance will be governed by, the laws of the State of Tennessee, excluding its conflict of laws principles. Any suit, action, or proceeding arising out of or relating to this Agreement will be decided in Davidson County, Tennessee. Licensee accepts the venue and jurisdiction of the Federal District Court of Middle Tennessee or the state courts in Davidson County, Tennessee. Headings are provided for convenience only. No omission or delay of either party hereto in requiring due and punctual fulfillment of the obligations of any other party hereto shall be deemed to constitute a waiver by such party of its rights to require such due and punctual fulfillment, or of any other of its remedies hereunder. Licensee shall not assign or transfer this Agreement or any of its rights or obligations hereunder, whether by operation of law or otherwise, without the prior written consent of Vanderbilt. Vanderbilt may assign its rights or obligations hereunder without the consent of or notice to Licensee. This Agreement shall inure to the benefit of and bind successors and permitted assigns of Vanderbilt and Licensee. If any provision of this Agreement shall be held to be invalid, illegal or unenforceable, the validity, legality, and enforceability of the remaining provisions will not be in any way affected or impaired thereby. In the event either party hereto is prevented from or delayed in the performance of any of its obligations hereunder by reason of acts of God, war, strikes, riots, storms, fires or any other cause whatsoever beyond the reasonable control of the non-performing party, the non-performing party shall be excused from the performance of any such obligation to the extent and during the period of such prevention or delay. This Agreement embodies the entire understanding of the parties and supersedes all previous communications, representations, or understandings, either oral or written, between the parties relating to the subject matter hereof. Attachment A TagDock is an efficient rigid body molecular docking algorithm that generates three-dimensional models of oligomeric biomolecular complexes in instances where there is limited experimental restraint data to guide the docking calculations. Through “distance difference analysis” TagDock additionally recommends followup experiments to further discriminate divergent (score-degenerate) clusters of TagDock’s initial solution models.